qsiprep
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qsiprep
Index
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Index
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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O
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P
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Q
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R
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S
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T
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U
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V
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W
_
__init__() (qsiprep.engine.workflows.LiterateWorkflow method)
A
add_suffix() (in module qsiprep.utils.misc)
aggregate_reports() (in module qsiprep.cli.group_report)
assert_circular() (qsiprep.utils.testing.TestWorkflow method)
assert_inputs_set() (qsiprep.utils.testing.TestWorkflow method)
assertIsAlmostExpectedWorkflow() (qsiprep.utils.testing.TestWorkflow method)
assertIsSubsetOfList() (qsiprep.utils.testing.TestWorkflow method)
B
before_send() (in module qsiprep.utils.sentry)
BIDSDataGrabber (class in qsiprep.interfaces.bids)
BIDSError
BIDSInfo (class in qsiprep.interfaces.bids)
BIDSWarning
build_qsiprep_workflow() (in module qsiprep.cli.run)
build_recon_workflow() (in module qsiprep.cli.run)
C
check_deps() (in module qsiprep.cli.run)
check_latest() (in module qsiprep.cli.version)
collect_data() (in module qsiprep.utils.bids)
collect_participants() (in module qsiprep.utils.bids)
collect_ukb_participants() (in module qsiprep.utils.ingress)
compute_affine() (in module qsiprep.utils.bspline)
create_ukb_layout() (in module qsiprep.utils.ingress)
D
DerivativesDataSink (class in qsiprep.interfaces.bids)
DerivativesMaybeDataSink (class in qsiprep.interfaces.bids)
E
Element (class in qsiprep.viz.reports)
expr (qsiprep.interfaces.bids.ReadSidecarJSON attribute)
F
FileNotFoundError
find_fieldmaps_from_other_dwis() (in module qsiprep.utils.grouping)
find_ukb_directory() (in module qsiprep.utils.ingress)
fix_multi_source_name() (in module qsiprep.utils.misc)
fix_multi_T1w_source_name() (in module qsiprep.utils.misc)
G
generate_interactive_report_summary() (in module qsiprep.viz.reports)
generate_name_title() (in module qsiprep.viz.reports)
generate_report() (qsiprep.viz.reports.Report method)
generate_reports() (in module qsiprep.viz.reports)
get_atlases() (in module qsiprep.utils.atlases)
get_bids_params() (in module qsiprep.interfaces.bids)
get_concatenated_bids_name() (in module qsiprep.utils.grouping)
get_grouping_test_data() (in module qsiprep.utils.testing)
get_highest_priority_fieldmap() (in module qsiprep.utils.grouping)
get_ijk() (in module qsiprep.utils.bspline)
get_inputs_outputs() (qsiprep.utils.testing.TestWorkflow method)
get_metadata_for_nifti() (in module qsiprep.interfaces.bids)
get_parser() (in module qsiprep.cli.run)
get_recon_output_name() (in module qsiprep.interfaces.bids)
get_session_groups() (in module qsiprep.utils.grouping)
group_by_warpspace() (in module qsiprep.utils.grouping)
group_dwi_scans() (in module qsiprep.utils.grouping)
group_for_concatenation() (in module qsiprep.utils.grouping)
group_for_eddy() (in module qsiprep.utils.grouping)
I
index() (qsiprep.viz.reports.Report method)
index_error_dir() (qsiprep.viz.reports.Report method)
is_flagged() (in module qsiprep.cli.version)
L
LiterateWorkflow (class in qsiprep.engine.workflows)
M
main() (in module qsiprep.cli.run)
make_sloppy() (in module qsiprep.utils.sloppy_recon)
merge_dwi_groups() (in module qsiprep.utils.grouping)
missing_from_ukb_directory() (in module qsiprep.utils.ingress)
module
qsiprep
qsiprep.cli
qsiprep.cli.group_report
qsiprep.cli.run
qsiprep.cli.version
qsiprep.engine
qsiprep.engine.workflows
qsiprep.interfaces.bids
qsiprep.utils
qsiprep.utils.atlases
qsiprep.utils.bids
qsiprep.utils.bspline
qsiprep.utils.grouping
qsiprep.utils.ingress
qsiprep.utils.misc
qsiprep.utils.sentry
qsiprep.utils.sloppy_recon
qsiprep.utils.testing
qsiprep.viz
qsiprep.viz.reports
qsiprep.viz.utils
qsiprep.workflows
qsiprep.workflows.dwi
,
[1]
O
order_by_run() (in module qsiprep.viz.reports)
out_path_base (qsiprep.interfaces.bids.DerivativesDataSink attribute)
(qsiprep.interfaces.bids.ReconDerivativesDataSink attribute)
P
plot_acpc() (in module qsiprep.viz.utils)
plot_denoise() (in module qsiprep.viz.utils)
process_crashfile() (in module qsiprep.utils.sentry)
Q
qsiprep
module
qsiprep.cli
module
qsiprep.cli.group_report
module
qsiprep.cli.run
module
qsiprep.cli.version
module
qsiprep.engine
module
qsiprep.engine.workflows
module
qsiprep.interfaces.bids
module
qsiprep.utils
module
qsiprep.utils.atlases
module
qsiprep.utils.bids
module
qsiprep.utils.bspline
module
qsiprep.utils.grouping
module
qsiprep.utils.ingress
module
qsiprep.utils.misc
module
qsiprep.utils.sentry
module
qsiprep.utils.sloppy_recon
module
qsiprep.utils.testing
module
qsiprep.viz
module
qsiprep.viz.reports
module
qsiprep.viz.utils
module
qsiprep.workflows
module
qsiprep.workflows.dwi
module
,
[1]
R
ReadSidecarJSON (class in qsiprep.interfaces.bids)
ReconDerivativesDataSink (class in qsiprep.interfaces.bids)
Report (class in qsiprep.viz.reports)
Reportlet (class in qsiprep.viz.reports)
run_reports() (in module qsiprep.viz.reports)
S
sentry_setup() (in module qsiprep.utils.sentry)
set_freesurfer_license() (in module qsiprep.cli.run)
slices_from_bbox() (in module qsiprep.viz.utils)
split_by_phase_encoding_direction() (in module qsiprep.utils.grouping)
start_ping() (in module qsiprep.utils.sentry)
SubReport (class in qsiprep.viz.reports)
T
tbspl_eval() (in module qsiprep.utils.bspline)
TestWorkflow (class in qsiprep.utils.testing)
U
ukb_dirname_to_bids() (in module qsiprep.utils.ingress)
update_metadata_from_nifti_header() (in module qsiprep.utils.bids)
update_params() (in module qsiprep.utils.sloppy_recon)
V
validate_bids() (in module qsiprep.cli.run)
validate_input_dir() (in module qsiprep.utils.bids)
visit_desc() (qsiprep.engine.workflows.LiterateWorkflow method)
W
write_derivative_description() (in module qsiprep.utils.bids)
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